PanFP: pangenome-based functional profiles for microbial communities
نویسندگان
چکیده
منابع مشابه
Distinctive Feature of Microbial Communities and Bacterial Functional Profiles in Tricholoma matsutake Dominant Soil
Tricholoma matsutake, the pine mushroom, is a valuable forest product with high economic value in Asia, and plays an important ecological role as an ectomycorrhizal fungus. Around the host tree, T. matsutake hyphae generate a distinctive soil aggregating environment called a fairy ring, where fruiting bodies form. Because T. matsutake hyphae dominate the soil near the fairy ring, this species h...
متن کاملDeveloping SSU rDNA metagenomic profiles of aquatic microbial communities
Five water samples from three sources, two municipal reservoirs in central North Carolina and Toolik Lake in Alaska, were processed to conduct a comparative survey of microbial small subunit rDNA sequences. Genomic DNA was extracted and amplified by PCR using universal SSU rDNA primers to generate 16S and 18S rDNA clone libraries and 50 clones from each library were sequenced and placed in oper...
متن کاملEcological restoration alters microbial communities in mine tailings profiles.
Ecological restoration of mine tailings have impact on soil physiochemical properties and microbial communities. The surface soil has been a primary concern in the past decades, however it remains poorly understood about the adaptive response of microbial communities along the profile during ecological restoration of the tailings. In this study, microbial communities along a 60-cm profile were ...
متن کاملSystematic discovery of antiphage defense systems in the microbial pangenome.
The arms race between bacteria and phages led to the development of sophisticated antiphage defense systems, including CRISPR-Cas and restriction-modification systems. Evidence suggests that known and unknown defense systems are located in "defense islands" in microbial genomes. Here, we comprehensively characterized the bacterial defensive arsenal by examining gene families that are clustered ...
متن کاملResponse of Broiler Chickens to Triticale-Based Diets Supplemented with Microbial Enzymes (2. Microbial Profiles and Activities)
The microbial profiles and activities of microbes in the digesta from chickens on diets containing Bogong or Canobolas with or without inclusion of microbial enzymes were investigated on the 384 day-old male Ross 308 broiler chickens. There was a reduction in population of C. perfringens (P < 0.01) of the ileum as a result of interaction between cultivar and xylanase. On the other hand, in the ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Research Notes
سال: 2015
ISSN: 1756-0500
DOI: 10.1186/s13104-015-1462-8